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Create your Virtual Lab to Perform Neuroscience at the Speed of Thought

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Virtual Labs

Accelerating neuroscience research

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The Open Brain Institute (OBI) is a non-profit organization whose mission is to empower researchers and organizations with advanced tools to explore and build digital brain models. By hosting Virtual Labs, equipped with computational modeling services and a comprehensive repository of digital brain models, the OBI enables users to conduct realistic brain simulations, test hypotheses, and explore the complexities of neural circuits.

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What are digital brains?

Digital brains are advanced computer models that replicate the structure and function of the brain. These models include key components such as neurons, synapses, circuits, brain regions, and the complex connectivity between neurons, known as the connectome. Powered by Artificial Intelligence (AI), vast amounts of research data and brain scan information are processed, structured into knowledge graphs and atlases, and applied in algorithms to recreate the behavior of various neuron types with remarkable precision. It took over two decades of research and development, involving 18 million lines of code, to create the sophisticated software ecosystem that allows the simulation and creation of these digital brains. But to unpack this, it all collapses down into five key steps to build the brain.

  • 01. Fill with Neurons

    The process begins by populating the brain model with neurons. Each neuron is represented as a distinct entity, with its own unique identity based on its type, behavior, and function. These neurons are organized to reflect the diversity found in the biological brain.
  • 02. Grow the dendrites

    Neurons grow dendrites—antenna-like structures that receive information from other neurons. It is now mathematically possible to recreate these dendritic branches for any neuron type, mimicking the brain’s capacity to form connections with other neurons.
  • 03. Grow the Axons

    Neurons also extend axons—long nerve fibers that transmit signals across vast distances within the brain. For example, in a mouse digital brain model, around 70,000 kilometers of axons must be generated, highlighting the extraordinary complexity and scale of brain connectivity.
  • 04. Connect axons and dendrites

    The next step involves connecting the axons and dendrites. Using advanced algorithms, intersection points are identified, and synapses are formed according to specific connection rules. This creates a massive graph that mirrors the connectivity of a biological brain.
  • 05. Switch it on

    The final step involves activating the digital brain. Using mathematical models, the electrical behavior of each neuron is simulated, capturing their unique properties both at the individual neuron level and the whole-brain level. This simulates not just the brain's structure, but its dynamic electrical activity.

Early adopters

IT IS FoundationInaitMilaThe Edmond & Lily Safra Center for Brain SciencesThe Hebrew University of JerusalemUC3M - Universidad Carlos 3 de MadridUniversité de Montréal

Digital brain models at different scales

The Open Brain Institute offers Virtual Labs—dynamic, cloud-based platforms where you can explore, build, and experiment with digital brain models across multiple scales. From individual neurons and microcircuits to entire brain regions and full-brain networks, access cutting-edge tools for simulation, visualization, and analysis. Unlock deeper insights into brain structure and function with scalable, high-resolution models designed to accelerate discovery and innovation.

Subcellular

Ion channel

Ion channel
Users can build Hodgkin-Huxley-type models of ion channels from whole-cell patch-clamp electrophysiological characterization of cells overexpressing the channel of interest.

Metabolism

Metabolism
A notebook allows users to model the metabolic behavior of tissue for both young and old states.

NGV unit

NGV unit
Simulate blood flow, metabolism, and neuronal activity to understand effects arising from particular cell types and layers.
Cellular

Single Neuron

Single Neuron
Load single cell models, perform various intracellular stimulation experiments with different levels of input, and observe the changes in membrane potential.

Synaptome

Synaptome
Add synapses and groups of synapses to single cell models and perform virtual experiments by setting up stimulation and recordings locations.

Paired neurons

Paired neurons
Retrieve interconnected Hodgkin-Huxley cell models from a circuit and conduct a simulated experiment by establishing a stimulation and reporting protocol.
Circuit

Small microcircuit

Small microcircuit
Circuit with 3-20 neurons together with synapses coming from inside and outside its volume (usually called intrinsic and extrinsic synapses respectively).

Microcircuit

Microcircuit
Any circuit larger than 20 neurons but not being a region, system, or whole-brain circuit.

NGV circuit

NGV circuit
Explore the structural geometry of circuits built with neurons, glia, and vasculature.
System

Brain region

Brain region
Build, explore, and simulate detailed or simplified brain region models. Browse anatomical and electrophysiological data to construct, refine, validate, and simulate models in silico.

Brain system

Brain system
Build, explore, and simulate brain system models. Study computational interactions by refining and validating regional models, then simulate and analyze their activity.

Whole brain

Whole brain
Build, explore, and simulate whole-brain models. Combine curated models or construct from scratch, then simulate, validate activity, and run in silico experiments.
Background

Who is behind the Open Brain Institute

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The Open Brain Institute (OBI) was founded in 2025 by Henry Markram with a vision to accelerate and democratize neuroscience research by empowering users with advanced digital brain modeling tools and data while fostering open collaboration.

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News and events

Replay | Spines & Motif Participation

Published May 11, 2026

In our second webinar, Michael Reimann demonstrated how the OBI Virtual Lab helps process complex EM data to extract valuable insights on spines and neural circuit organization. Discover how high-resolution EM data and digital brain models are advancing our understanding of neural circuit organization.

Replay | Spines & Motif Participation

Webinar | Spines & Motif Participation

Published April 2, 2026

The second webinar of our series is open for registration! Most cortical excitatory connections are made onto dendritic spines. But beyond plasticity, could spines actually enable which connections are formed? Using our Virtual Labs and EM data from the #MICrONS project (Allen Brain Institute), we will explore whether dendritic spine anatomy is linked to the topology of local brain networks.

Webinar | Spines & Motif Participation

Replay | From Ion Channel Mutations to Neuronal Dysfunction

Published March 20, 2026

In this webinar, we explored how pathogenic variants — such as the R581Q mutation in KCNQ2 — can be transformed into predictive, multiscale brain models, and showcased our Virtual Labs where experimental data, biophysical modeling, simulation workflows, and AI-assisted discovery come together to bridge genes, neurons, and networks.

Replay | From Ion Channel Mutations to Neuronal Dysfunction

Meet Open Brain Scientist James Isbister during Hybrid Minds Vienna 2026

Published February 26, 2026

Leveraging and Accelerating Simulations Neuroscience. Multi-scale biophysically-detailed brain models are a powerful scientific tool, acting as general models for exploring a wide range of scientific questions. The talk introduces these models and proven applications, from understanding spike sorting biases to predicting structure-function relationships. Openly available electron-microscopic datasets enable the next generation of one-to-one tissue models. Lessons learned from previous collaborative efforts are characterized to leverage existing models and accelerate new model development. The Virtual Labs of the Open Brain Institute, an open platform for collaborative neuroscience, simplify international teams’ efforts to leverage existing models and build one-to-one brain models.

Meet Open Brain Scientist James Isbister during Hybrid Minds Vienna 2026
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Background

A world-class team of scientists, engineers, and innovators

The Open Brain Institute is guided by visionary founder Henry and backed by a distinguished board of pioneering neuroscientists and open science advocates Kamila Markram, Idan Segev, Javier de Felipe Oroquieta, and Sean Hill. Our dynamic team includes world-class scientists, engineers, and innovators dedicated to advancing the Open Brain Platform and accelerating neuroscience research.

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From individual projects to large-scale initiatives, we offer flexible options to support your brain modeling and simulation goals.

OBP Plan

Free

Create Your Virtual Lab for Free: Our entry plan for the curious, with limited free credits to kickstart your simulation neuroscience journey!

Free
OBP Plan

Pro

Unlock the full potential: Access all platform features, invite lab members and receive additional free credits to take your neuroscience journey to the next level.

Pro
OBP Plan

Premium

Discover limitless possibilities: Access advanced features, enjoy exclusive onboarding, and benefit from a dedicated account manager. Contact us for tailored support and solutions.

Premium
Our plans in detail

How can we collaborate and help you achieve greatness?

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We welcome researchers, developers, and institutions to collaborate with us on cutting-edge neuroscience projects. Whether you’re exploring brain simulations, AI-driven analysis, or innovative neurotechnology, the Open Brain Institute is eager to discuss and support your work. Let’s advance neuroscience together! Contact us today to explore partnership opportunities and bring your ideas to life.

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Background

The Real Digital Brain Story

It took over two decades of research and development, involving 18 million lines of code, to create the sophisticated software ecosystem that allows the simulation and creation of digital brains.

Discover the story in detail

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